INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JN391180 | Salmonella phage SPN1S | 38684 | 50.163 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | pathenogenic Salmonella bacterium | High-quality | High-quality | 96.900 | AAI-based (high-confidence) | Uetakevirus | Uetakevirus SPN1S | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29 |
| JN391441 | Mycobacterium phage Elph10 | 74675 | 63.008 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus CJW1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_51;immunity orf_54 |
| JN398368 | Mycobacterium phage GUmbie | 57387 | 61.369 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.660 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus gumbie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42;antirepressor orf_44 |
| JN398369 | Mycobacterium phage RidgeCB | 50844 | 63.952 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.910 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus ridgecb | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_65 |
| JN408459 | Mycobacterium phage Cuco | 50965 | 60.857 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus cuco | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;immunity orf_62 |
| JN408460 | Mycobacterium phage Turbido | 53169 | 63.283 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus turbido | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_71 |
| JN408461 | Mycobacterium phage Trixie | 53526 | 64.464 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus trixie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_32;antirepressor orf_65;immunity orf_70 |
| JN412588 | Mycobacterium phage Dandelion | 157568 | 64.726 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.800 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus dandelion | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN412589 | Mycobacterium phage Patience | 70506 | 50.304 | Mycobacterium | Group I | Patiencevirus | Patiencevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Patiencevirus | Patiencevirus patience | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN412590 | Mycobacterium phage Eureka | 76174 | 62.852 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus eureka | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48;immunity orf_51 |