INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JN243857	Mycobacterium phage Wile	51308	63.690	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus backyardigan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
JN254800	Pseudomonas phage NH-4	66116	55.549	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus NH4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN254801	Pseudomonas phage MR299-2	44789	52.044	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.830	AAI-based (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN255163	Mannheimia phage vB_MhM_1152AP	34719	41.568	Mannheimia	Group I	Baylorvirus	Baylorvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 1152AP serotype 6	High-quality	High-quality	97.100	AAI-based (high-confidence)	Baylorvirus	Baylorvirus PHL101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_34;cro orf_35;integrase orf_50
JN256079	Mycobacterium phage Charlie	43036	66.331	Mycobacterium	Group I	Charlievirus	Charlievirus	Nclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Charlievirus	Charlievirus Charlie	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_35
JN371768	Synechococcus phage S-MbCM6	176043	39.119	Synechococcus	Group I	Namakavirus	Namakavirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Namakavirus	Namakavirus smbcm6	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
JN371769	Synechococcus phage metaG-MbCM1	172879	39.762	Synechococcus	Group I	Galenevirus	Galenevirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.000	AAI-based (high-confidence)	Galenevirus	Galenevirus mbcm1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
JN377894	Aeromonas phage Aes508	160646	41.227	Aeromonas	Group I	Tulanevirus	Tulanevirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas salmonicida	High-quality	High-quality	94.920	AAI-based (high-confidence)	Tulanevirus	Tulanevirus aes508	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN377895	Aeromonas phage Aes012	161978	41.300	Aeromonas	Group I	Tulanevirus	Tulanevirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas sp.	High-quality	High-quality	95.700	AAI-based (high-confidence)	Tulanevirus	Tulanevirus aes12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN382248	Mycobacterium phage Lilac	76260	62.969	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_54;immunity orf_57