INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_002194 | Chlamydia phage 2 | 4563 | 40.938 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydia psittaci | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002214 | Streptococcus phage Sfi11 | 39807 | 38.556 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_34 | |||
| NC_002321 | Staphylococcus phage PVL | 41401 | 33.555 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 49775 | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | temperate | integrase orf_30;cro orf_33;antirepressor orf_37 | |||
| NC_002362 | Vibrio phage VfO3K6 | 8784 | 45.162 | Vibrio | Group II | Versovirus | Versovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio parahaemolyticus | High-quality | High-quality | 94.340 | AAI-based (high-confidence) | lytic | ||||
| NC_002363 | Vibrio phage VfO4K68 | 6891 | 47.236 | Vibrio | Group II | Versovirus | Versovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio parahaemolyticus O4:K68 | Medium-quality | Genome-fragment | 74.550 | AAI-based (high-confidence) | lytic | ||||
| NC_002371 | Salmonella phage P22 | 41724 | 47.090 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_65 | |||
| NC_002484 | Pseudomonas phage D3 | 56426 | 57.805 | Pseudomonas | Group I | Detrevirus | Detrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_33 | |||
| NC_002486 | Staphylococcus prophage phiPV83 | 45636 | 33.476 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_8;antirepressor orf_12;integrase orf_35 | |||
| NC_002515 | Mycoplasma phage P1 | 11660 | 26.792 | Mycoplasma | Group I | Delislevirus | Delislevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycoplasmopsis pulmonis | Low-quality | Genome-fragment | 31.090 | HMM-based (lower-bound) | temperate | integrase orf_8 | |||
| NC_002519 | Roseobacter phage SIO1 | 39898 | 46.160 | Roseobacter | Group I | Siovirus | Siovirus | Cobavirinae | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rosebacter SIO67 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | lytic |