INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_001954 | Escherichia phage If1 | 8454 | 43.707 | Escherichia | Group II | Infulavirus | Infulavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_001956 | Vibrio phage fs2 | 8651 | 44.527 | Vibrio | Group II | Saetivirus | Saetivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_001978 | Lomovskayavirus C31 | 41491 | 63.619 | Unspecified | Group I | Lomovskayavirus | Lomovskayavirus | Unclassified | Colingsworthviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_46 | |||
| NC_001998 | Chlamydia phage CPG1 | 4529 | 40.980 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydia psittaci | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002014 | Salmonella phage IKe | 6883 | 40.549 | Salmonella | Group II | Lineavirus | Lineavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002072 | Streptococcus phage DT1 | 34815 | 39.072 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.970 | AAI-based (high-confidence) | lytic | ||||
| NC_002166 | Escherichia phage HK022 | 40751 | 49.483 | Escherichia | Group I | Shamshuipovirus | Shamshuipovirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_27 | |||
| NC_002167 | Escherichia phage HK97 | 39732 | 49.786 | Escherichia | Group I | Byrnievirus | Byrnievirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_38;antirepressor orf_39 | |||
| NC_002180 | Chlamydia phage phiCPAR39 | 4532 | 40.622 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydophila pneumoniae AR39 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002185 | Streptococcus phage 7201 | 35466 | 38.727 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 96.390 | AAI-based (high-confidence) | lytic |