INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JN116826	Rhodococcus phage RGL3	48072	62.660	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus globerulus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RGL3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_22
JN116827	Rhodococcus phage RER2	46586	58.571	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis	High-quality	High-quality	99.000	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_22;immunity orf_51
JN116828	Nocardia phage NBR1	46140	67.503	Nocardia	Group I	Nubrunavirus	Nubrunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Nocardia brasiliensis	High-quality	High-quality	99.770	AAI-based (high-confidence)	Nubrunavirus	Nubrunavirus NBR1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN126049	Salmonella typhimurium phage PhiSH19	157785	44.685	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella typhimurium	High-quality	High-quality	99.830	AAI-based (high-confidence)	Kuttervirus	Kuttervirus SH19	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN132397	Campylobacter phage CPX	132662	26.043	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fletchervirus	Fletchervirus CPX	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JN153085	Mycobacterium phage Doom	51421	63.807	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.040	AAI-based (high-confidence)	Fromanvirus	Fromanvirus doom	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_64
JN153086	Mycobacterium phage Euphoria	53597	63.675	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus euphoria	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_71
JN175269	Pseudomonas phage phiPto-bp6g	26499	42.711	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas tolaasii	Low-quality	Genome-fragment	25.550	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	cro orf_2
JN185608	Mycobacterium phage JAWS	59749	66.617	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.620	AAI-based (high-confidence)	Anayavirus	Anayavirus JAWS	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_40;immunity orf_42
JN190960	Rhodobacter phage RcapMu	39283	64.896	Rhodobacter	Group I	Rcapmuvirus	Rcapmuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus SB1003	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rcapmuvirus	Rcapmuvirus capmu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_13