Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
JN022534Xanthomonas phage vB_XveM_DIBBI4998152.402XanthomonasGroup I DibbivirusDibbivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas vesicatoriaHigh-qualityHigh-quality99.960AAI-based (high-confidence) DibbivirusDibbivirus DIBBICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN035618Gordonia phage GTE77443156.783GordoniaGroup I GetseptimavirusGetseptimavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae strain Ben601High-qualityHigh-quality100.000AAI-based (high-confidence) GetseptimavirusGetseptimavirus GTE7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN049605Mycobacterium phage EricB5170261.533MycobacteriumGroup I GladiatorvirusGladiatorvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.440AAI-based (high-confidence) GladiatorvirusGladiatorvirus ericBCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateparA orf_32;immunity orf_68
JN051154Pediococcus phage cIP13801347.607PediococcusGroup I CoetzeevirusCoetzeevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) CoetzeevirusCoetzeevirus cIP1The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
JN083852Mycobacterium phage Benedict5108359.797MycobacteriumGroup I BenedictvirusBenedictvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BenedictvirusBenedictvirus benedictCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;immunity orf_67
JN083853Mycobacterium phage Airmid5124159.960MycobacteriumGroup I BenedictvirusBenedictvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BenedictvirusBenedictvirus benedictCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;immunity orf_67
JN116822Rhodococcus phage RRH11427068.381RhodococcusGroup I EdwardsroadvirusEdwardsroadvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus rhodochrous str. Rrho39High-qualityHigh-quality100.000AAI-based (high-confidence) EdwardsroadvirusEdwardsroadvirus RRH1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN116823Rhodococcus phage REQ24933065.406RhodococcusGroup I MelbournevirusMelbournevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality100.000AAI-based (high-confidence) MelbournevirusMelbournevirus REQ2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_38
JN116824Rhodococcus phage REQ33947465.950RhodococcusGroup I WodongavirusWodongavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality100.000AAI-based (high-confidence) WodongavirusWodongavirus REQ3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
JN116825Rhodococcus phage REQ15134266.324RhodococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus equiHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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