INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JN022534 | Xanthomonas phage vB_XveM_DIBBI | 49981 | 52.402 | Xanthomonas | Group I | Dibbivirus | Dibbivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas vesicatoria | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | Dibbivirus | Dibbivirus DIBBI | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN035618 | Gordonia phage GTE7 | 74431 | 56.783 | Gordonia | Group I | Getseptimavirus | Getseptimavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae strain Ben601 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Getseptimavirus | Getseptimavirus GTE7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN049605 | Mycobacterium phage EricB | 51702 | 61.533 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.440 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus ericB | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_32;immunity orf_68 |
| JN051154 | Pediococcus phage cIP1 | 38013 | 47.607 | Pediococcus | Group I | Coetzeevirus | Coetzeevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coetzeevirus | Coetzeevirus cIP1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JN083852 | Mycobacterium phage Benedict | 51083 | 59.797 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus benedict | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;immunity orf_67 |
| JN083853 | Mycobacterium phage Airmid | 51241 | 59.960 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus benedict | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;immunity orf_67 |
| JN116822 | Rhodococcus phage RRH1 | 14270 | 68.381 | Rhodococcus | Group I | Edwardsroadvirus | Edwardsroadvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus rhodochrous str. Rrho39 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Edwardsroadvirus | Edwardsroadvirus RRH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN116823 | Rhodococcus phage REQ2 | 49330 | 65.406 | Rhodococcus | Group I | Melbournevirus | Melbournevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Melbournevirus | Melbournevirus REQ2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_38 |
| JN116824 | Rhodococcus phage REQ3 | 39474 | 65.950 | Rhodococcus | Group I | Wodongavirus | Wodongavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Wodongavirus | Wodongavirus REQ3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| JN116825 | Rhodococcus phage REQ1 | 51342 | 66.324 | Rhodococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |