INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JF974294 | Aeromonas phage pIS4-A | 47624 | 47.279 | Aeromonas | Group I | Roufvirus | Roufvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas sp. IS4 | Complete | High-quality | 100.000 | DTR (high-confidence) | Roufvirus | Roufvirus pIS4A | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JF974295 | Psychrobacter phage pOW20-A | 40803 | 44.056 | Psychrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Psychrobacter sp. OW20 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_5 |
| JF974296 | Pseudoalteromonas phage pYD6-A | 76802 | 38.658 | Pseudoalteromonas | Group I | Matsuvirus | Matsuvirus | Fuhrmanvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. YD6 | Complete | High-quality | 100.000 | DTR (high-confidence) | Matsuvirus | Matsuvirus pYD6A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JF974299 | Synechococcus phage S-CAM8 | 171405 | 39.343 | Synechococcus | Group I | Neritesvirus | Neritesvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.000 | AAI-based (high-confidence) | Neritesvirus | Neritesvirus scam8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JF974307 | Rhodovulum phage RS1 | 40231 | 62.119 | Rhodovulum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodovulum sp. P122A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ricunavirus | Ricunavirus RC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_7 |
| JF974308 | Rhodobacter phage RC1 | 39573 | 62.272 | Rhodobacter | Group I | Ricunavirus | Ricunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodobacter sp. E32 | High-quality | High-quality | 98.360 | AAI-based (high-confidence) | Ricunavirus | Ricunavirus RC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_47 |
| JF974312 | Vibrio phage pYD38-A | 47552 | 47.289 | Vibrio | Group I | Roufvirus | Roufvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. YD38 | Complete | High-quality | 100.000 | DTR (high-confidence) | Roufvirus | Roufvirus pIS4A | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JF974313 | Vibrio phage pYD38-B | 37324 | 43.077 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. YD38 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JF974314 | Rhizobium phage RR1-A | 53102 | 57.164 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium radiobacter P007 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_67 |
| JF974315 | Rhizobium phage RR1-B | 37378 | 58.272 | Rhizobium | Group I | Ribunavirus | Ribunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium radiobacter P007 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ribunavirus | Ribunavirus RR1B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |