INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JF957058 | Mycobacterium phage HelDan | 50364 | 63.984 | Mycobacterium | Group I | Veracruzvirus | Veracruzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Veracruzvirus | Veracruzvirus heldan | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_67 |
| JF957059 | Mycobacterium phage Optimus | 109270 | 60.791 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Omegavirus | Omegavirus optimus | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_73;immunity orf_84 |
| JF957060 | Mycobacterium phage Timshel | 53278 | 63.144 | Mycobacterium | Group I | Timshelvirus | Timshelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Timshelvirus | Timshelvirus timshel | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_66 |
| JF966203 | Bacillus phage Bastille | 153962 | 38.144 | Bacillus | Group I | Bastillevirus | Bastillevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus HER1399 | High-quality | High-quality | 95.120 | AAI-based (high-confidence) | Bastillevirus | Bastillevirus bastille | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JF974286 | Prochlorococcus phage MED4-184 | 38327 | 37.157 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus MED4 | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JF974287 | Vibrio phage pYD21-A | 46917 | 43.897 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. YD21 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JF974288 | Synechococcus phage S-RIM8 A.HR1 | 171211 | 40.631 | Synechococcus | Group I | Neptunevirus | Neptunevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.070 | AAI-based (high-confidence) | Neptunevirus | Neptunevirus srim18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JF974289 | Synechococcus phage S-RIM8 A.HR3 | 171211 | 40.631 | Synechococcus | Group I | Neptunevirus | Neptunevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.070 | AAI-based (high-confidence) | Neptunevirus | Neptunevirus srim18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JF974292 | Cyanophage S-SSM2 | 179980 | 41.096 | Synechococcus | Group I | Ahtivirus | Ahtivirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8102 | Complete | High-quality | 100.000 | DTR (high-confidence) | Ahtivirus | Ahtivirus sagseatwo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JF974293 | Synechococcus phage KBS-M-1A | 171744 | 40.637 | Synechococcus | Group I | Neptunevirus | Neptunevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Neptunevirus | Neptunevirus srim18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |