INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ634178 | Synechococcus phage S-CAM8 | 171407 | 39.333 | Synechococcus | Group I | Neritesvirus | Neritesvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.000 | AAI-based (high-confidence) | Neritesvirus | Neritesvirus scam8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ634187 | Cyanophage KBS-S-2A | 40658 | 49.068 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ634188 | Cyanophage KBS-P-1A | 45730 | 47.354 | Synechococcus | Group I | Sednavirus | Sednavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sednavirus | Sednavirus SRIP2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HQ634189 | Synechococcus phage Syn30 | 178807 | 39.948 | Synechococcus | Group I | Leucotheavirus | Leucotheavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | Leucotheavirus | Leucotheavirus syn30 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634190 | Cyanophage Syn2 | 175596 | 41.271 | Synechococcus | Group I | Pontusvirus | Pontusvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8012 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pontusvirus | Pontusvirus syn19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634191 | Cyanophage Syn10 | 177103 | 40.607 | Synechococcus | Group I | Ormenosvirus | Ormenosvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8017 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ormenosvirus | Ormenosvirus syn9 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634192 | Cellulophaga phage phiST | 79114 | 30.201 | Cellulophaga | Group I | Cbastvirus | Cbastvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cellulophaga sp. MM#3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Cbastvirus | Cbastvirus ST | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634193 | Cyanophage P-RSM6 | 192497 | 39.316 | Prochlorococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus NATL2A | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HQ634194 | Vibrio phage VBP47 | 76705 | 42.456 | Vibrio | Group I | Stoningtonvirus | Stoningtonvirus | Fuhrmanvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus RIMD2210633 | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | Stoningtonvirus | Stoningtonvirus VBP47 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ634195 | Vibrio phage eugene 12A10 | 138234 | 37.954 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. 12A10 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |