INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF227250 | Enterobacteria phage KU1 | 3486 | 46.529 | Enterobacteria | Group IV | Emesvirus | Emesvirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF232233 | Pseudomonas phage B3 | 38439 | 63.160 | Pseudomonas | Group I | Beetrevirus | Beetrevirus | Guarnerosvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 (ATCC 15692) | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | Beetrevirus | Beetrevirus B3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_12 |
| AF234172 | Escherichia phage P1 | 94800 | 47.311 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.740 | AAI-based (high-confidence) | Punavirus | Punavirus P1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_44;parA orf_56;cro orf_99;cro orf_100 |
| AF234173 | Escherichia phage P1 | 94481 | 47.310 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.440 | AAI-based (high-confidence) | Punavirus | Punavirus P1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_43;parA orf_55;cro orf_98;cro orf_99 |
| AF242738 | Lactococcus phage phiLC3 | 32172 | 35.509 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris | High-quality | High-quality | 94.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_3;cro orf_5;antirepressor orf_6 |
| AF246223 | Mycoplasma phage P1 | 11660 | 26.792 | Mycoplasma | Group I | Delislevirus | Delislevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycoplasmopsis pulmonis | Low-quality | Genome-fragment | 31.090 | HMM-based (lower-bound) | Delislevirus | Delislevirus P1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8 |
| AF271693 | Mycobacterium phage Bxb1 | 50550 | 63.650 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.380 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus Bxb1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;immunity orf_67 |
| AF274751 | Enterobacteria phage S13 | 5386 | 44.319 | Enterobacteria | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 91.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF299300 | Escherichia phage phiX174 | 5359 | 44.635 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 91.210 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF299301 | Escherichia phage phiX174 | 5383 | 44.771 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 91.630 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |