INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF176031 | Escherichia phage phiX174 | 5386 | 44.653 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 91.570 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF176032 | Escherichia phage phiX174 | 5359 | 44.598 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli C | High-quality | High-quality | 91.110 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF176033 | Escherichia phage phiX174 | 5388 | 44.655 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli C | High-quality | High-quality | 91.610 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF176034 | Escherichia phage phiX174 | 5386 | 44.709 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 91.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF189021 | Roseobacter phage SIO1 | 39898 | 46.160 | Roseobacter | Group I | Siovirus | Siovirus | Cobavirinae | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rosebacter SIO67 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Siovirus | Siovirus americense | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AF191796 | His 1 virus | 14462 | 38.854 | Unspecified | Unclassified | Salterprovirus | Salterprovirus | Unclassified | Halspiviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Low-quality | Genome-fragment | 34.410 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AF191797 | His2 virus | 16067 | 40.368 | Unspecified | Group II | Gammapleolipovirus | Gammapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Unspecified | Low-quality | Genome-fragment | 38.230 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AF195902 | Lactobacillus prophage Lj771 | 40881 | 36.401 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus johnsonii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_4;antirepressor orf_15 |
| AF217253 | Salmonella phage P22 | 41724 | 47.081 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus P22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_3;integrase orf_19;cro orf_25;antirepressor orf_42;integrase orf_45;cro orf_63;antirepressor orf_64 |
| AF222060 | Halorubrum phage HF2 | 77672 | 55.849 | Halorubrum | Group I | Haloferacalesvirus | Haloferacalesvirus | Unclassified | Hafunaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum coriense | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_74 |