INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK422452 | Klebsiella phage ST13-OXA48phi12.2 | 34141 | 50.485 | Klebsiella | Group I | Corunyavirus | Corunyavirus | Unclassified | Pituviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST13-OXA48 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Corunyavirus | Corunyavirus ST13OXA48phi122 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK422453 | Klebsiella phage ST13-OXA48phi12.1 | 39086 | 53.526 | Klebsiella | Group I | Dagavirus | Dagavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST13-OXA48 | High-quality | High-quality | 90.630 | AAI-based (high-confidence) | Dagavirus | Dagavirus ST13OXA48phi121 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_47 |
| MK422454 | Klebsiella phage ST340-VIM1phi10.2 | 33326 | 51.461 | Klebsiella | Group I | Kapieceevirus | Kapieceevirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST340-VIM1 | High-quality | High-quality | 95.000 | AAI-based (high-confidence) | Kapieceevirus | Kapieceevirus ST512KPC3phi132 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK422455 | Klebsiella phage ST340-VIM1phi10.1 | 36124 | 51.747 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST340-VIM1 | Medium-quality | Genome-fragment | 85.450 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_38;integrase orf_53 |
| MK424903 | Pseudoalteromonas phage GXT1010 | 12527 | 43.195 | Pseudoalteromonas | Unclassified | Merivirus | Merivirus | Unclassified | Corticoviridae | Vinavirales | Belvinaviricetes | Produgelaviricota | Abadenavirae | Varidnaviria | Pseudoalteromonas sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK433261 | Gordonia phage Msay19 | 77513 | 59.004 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus birksandsocks | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK433262 | Mycobacterium phage Nimrod | 76435 | 62.914 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_54;immunity orf_57 |
| MK433263 | Gordonia phage FelixAlejandro | 77553 | 58.911 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus birksandsocks | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK433264 | Gordonia phage Tiamoceli | 55829 | 67.698 | Gordonia | Group I | Dexdertvirus | Dexdertvirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | Dexdertvirus | Dexdertvirus tiamoceli | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK433265 | Gordonia phage Exiguo | 75285 | 58.939 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus monty | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |