INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK392364 | Streptomyces phage Nishikigoi | 50660 | 66.824 | Streptomyces | Group I | Omarvirus | Omarvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces xanthochromogenes NRRL B-5410 | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | Omarvirus | Omarvirus tefunt | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_29;integrase orf_53 |
| MK392365 | Streptomyces phage TinaBelcher | 52490 | 67.718 | Streptomyces | Group I | Caelumvirus | Caelumvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces xanthochromogenes NRRL B-5410 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Caelumvirus | Caelumvirus thestral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_29;integrase orf_53 |
| MK392366 | Streptomyces phage Janus | 50632 | 67.047 | Streptomyces | Group I | Janusvirus | Janusvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces xanthochromogenes NRRL B-5410 | High-quality | High-quality | 99.610 | AAI-based (high-confidence) | Janusvirus | Janusvirus janus | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_29;integrase orf_51 |
| MK392367 | Mycobacterium phage BabeRuth | 42595 | 66.146 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | Charlievirus | Charlievirus redi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;immunity orf_35 |
| MK393882 | Salmonella phage 3-29 | 110377 | 40.045 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 97.560 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus ev329 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK408758 | Campylobacter phage CP20 | 174820 | 27.351 | Campylobacter | Group I | Firehammervirus | Firehammervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter jejuni | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | Firehammervirus | Firehammervirus CPt10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK411746 | Arthrobacter phage Sonali | 61073 | 67.740 | Arthrobacter | Group I | Sonalivirus | Sonalivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sonalivirus | Sonalivirus sonali | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30 |
| MK411820 | Acinetobacter phage vB_AbaS_D0 | 43051 | 45.481 | Acinetobacter | Group I | Lokivirus | Lokivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lokivirus | Lokivirus IMEAB3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK416007 | Klebsiella phage ST405-OXA48phi1.2 | 40495 | 52.135 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST405-OXA48 | High-quality | High-quality | 94.470 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1 |
| MK416008 | Klebsiella phage ST405-OXA48phi1.3 | 32010 | 50.887 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST405-OXA48 | Medium-quality | Genome-fragment | 64.550 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic |