INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK327947	Escherichia phage vB_EcoM_G5211	164278	40.440	Escherichia	Group I	Krischvirus	Krischvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	98.590	AAI-based (high-confidence)	Krischvirus	Krischvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK330684	Aeromonas phage ZPAH7B	30791	56.780	Aeromonas	Group I	Aerosvirus	Aerosvirus	Unclassified	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila ZYAH75	Medium-quality	Genome-fragment	77.150	AAI-based (high-confidence)	Aerosvirus	Aerosvirus ZPAH7	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MK331930	Staphylococcus phage CH1	138057	30.426	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus DSM-20231	High-quality	High-quality	97.490	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK331931	Staphylococcus phage Sa30	146737	30.352	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK335533	Shigella phage vB_SsoS_008	50414	45.656	Shigella	Group I	Tunavirus	Tunavirus	Tunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella sonnei	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tunavirus	Tunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28
MK340760	Pseudomonas phage vB_PaeM_SCUT-S1	66086	55.432	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus S1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK340761	Pseudomonas phage vB_PaeM_SCUT-S2	94434	49.345	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	Complete	High-quality	100.000	DTR (high-confidence)	Pakpunavirus	Pakpunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_86
MK340941	Acinetobacter phage AbTJ	42670	39.323	Acinetobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii MDR-TJ	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1
MK348510	Staphylococcus phage vB_SauS_fPfSau02	45108	33.708	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	96.830	AAI-based (high-confidence)	Triavirus	Triavirus fPfSau02	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;antirepressor orf_31;integrase orf_62
MK358448	Vibrio phage 5 TSL-2019	238053	43.237	Vibrio	Group I	Aphroditevirus	Aphroditevirus	Gorgonvirinae	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus	Complete	High-quality	100.000	DTR (high-confidence)	Aphroditevirus	Aphroditevirus USC1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic