INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK310144 | Mycobacterium phage CicholasNage | 71059 | 58.612 | Mycobacterium | Group I | Bronvirus | Bronvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 93.990 | AAI-based (high-confidence) | Bronvirus | Bronvirus cicholasnage | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34;antirepressor orf_54 |
| MK310145 | Mycobacterium phage Lemur | 51370 | 63.899 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus peaches | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33;immunity orf_65 |
| MK310182 | Escherichia phage NC-A | 39536 | 48.816 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NC101 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus NCA | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK310183 | Phage NC-B | 76641 | 42.077 | Unspecified | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NC101 | Complete | High-quality | 100.000 | DTR (high-confidence) | Suseptimavirus | Suseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK310184 | Phage NC-G | 170164 | 39.522 | Unspecified | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NC101 | Complete | High-quality | 100.000 | DTR (high-confidence) | Dhakavirus | Dhakavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK310226 | Halobacterium phage ChaoS9 | 55145 | 65.273 | Halobacterium | Group I | Chaovirus | Chaovirus | Unclassified | Vertoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halobacterium salinarum strain S9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK310228 | Bacillus phage vB_BthP-HD73phi | 25867 | 30.518 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis HD73 | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | Claudivirus | Claudivirus Goe4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK317959 | Pseudomonas phage EPa61 | 65905 | 55.134 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus EPa61 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK318076 | Pseudomonas phage vB_PaeM_fHoPae01 | 66418 | 55.724 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus pv141 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK318083 | Aeromonas phage Akh-2 | 114901 | 40.970 | Aeromonas | Group I | Shenzhenvirus | Shenzhenvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_87 |