INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK202160	Streptococcus phage CHPC1232	31974	38.281	Streptococcus	Group I	Aliceevansviridae	Unclassified	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus STCH_18	Medium-quality	Genome-fragment	86.560	AAI-based (high-confidence)	Vansinderenvirus	Vansinderenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_26;cro orf_27
MK202161	Streptococcus phage CHPC1282	34785	38.051	Streptococcus	Group I	Vansinderenvirus	Vansinderenvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus STCH_16	High-quality	High-quality	98.980	AAI-based (high-confidence)	Vansinderenvirus	Vansinderenvirus CHPC1282	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27
MK203841	Klebsiella phage Henu1	40352	53.142	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.860	AAI-based (high-confidence)	Przondovirus	Przondovirus henu1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK203850	Alteromonas phage ZP6	38080	50.095	Alteromonas	Group I	Mareflavirus	Mareflavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Alteromonas macleodii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mareflavirus	Mareflavirus ZP6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK211557	Staphylococcus phage Henu2	43513	35.040	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus N315	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus Henu2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_15;cro orf_18;antirepressor orf_20;antirepressor orf_23;integrase orf_42
MK213795	Escherichia phage MS2	3526	52.184	Escherichia	Group IV	Emesvirus	Emesvirus	Unclassified	Fiersviridae	Norzivirales	Leviviricetes	Lenarviricota	Orthornavirae	Riboviria	Escherichia coli ATCC 15597	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
MK213796	Escherichia phage T1	48836	45.552	Escherichia	Group I	Tunavirus	Tunavirus	Tunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli ATCC 11303	High-quality	High-quality	97.540	AAI-based (high-confidence)	Tunavirus	Tunavirus T1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK214385	Salmonella phage TS6	41515	51.131	Salmonella	Group I	Cornellvirus	Cornellvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	97.600	AAI-based (high-confidence)	Cornellvirus	Cornellvirus TS6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK215646	Bacillus phage vB_BthM-Goe5	157804	37.948	Bacillus	Group I	Bastillevirus	Bastillevirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis serovar kurstaki HD-1	Complete	High-quality	100.000	DTR (high-confidence)	Bastillevirus	Bastillevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK224497	Mycobacterium phage Henu3	58899	67.612	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus henu3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_12;cro orf_46;immunity orf_47;integrase orf_49