INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK075004 | Staphylococcus phage phiSP119-1 | 49795 | 36.421 | Staphylococcus | Group I | Fibralongavirus | Fibralongavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius 14-29-119 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;antirepressor orf_8 |
| MK075005 | Staphylococcus phage phiSP119-2 | 40011 | 34.091 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius 14-29-119 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_11 |
| MK075006 | Staphylococcus phage phiSP119-3 | 44311 | 35.625 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_4;antirepressor orf_13 |
| MK080312 | Salmonella phage Astrid | 11713 | 39.751 | Salmonella | Group I | Astrithrvirus | Astrithrvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis PT1 | Complete | High-quality | 100.000 | ITR (high-confidence) | Astrithrvirus | Astrithrvirus astrithr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK084630 | Bacillus phage StevenHerd11 | 23953 | 30.635 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis Kurstaki | High-quality | High-quality | 91.380 | AAI-based (high-confidence) | Claudivirus | Claudivirus stitch | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK085976 | Bacillus phage AP631 | 39549 | 35.007 | Bacillus | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.850 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus AP631 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27;antirepressor orf_34 |
| MK088078 | Marinobacter phage AS1 | 36994 | 57.044 | Marinobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Marinobacter sp. D1S9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_23 |
| MK089780 | Acinetobacter phage vB_AbaP_APK14 | 41767 | 39.196 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii AB5256 | Complete | High-quality | 100.000 | DTR (high-confidence) | Friunavirus | Friunavirus APK14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK095192 | Pectobacterium phage Astalicious | 42818 | 49.012 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM18077 | High-quality | High-quality | 97.140 | AAI-based (high-confidence) | Phimunavirus | Phimunavirus nobby | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK095193 | Pectobacterium phage Clickz | 43310 | 49.192 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM18077 | High-quality | High-quality | 98.240 | AAI-based (high-confidence) | Phimunavirus | Phimunavirus Clickz | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |