INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK016501 | Mycobacterium phage Nebkiss | 85613 | 56.490 | Mycobacterium | Group I | Gaiavirus | Gaiavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.370 | AAI-based (high-confidence) | Gaiavirus | Gaiavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_47 |
| MK016502 | Mycobacterium phage Pat3 | 75675 | 62.871 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.400 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_49;immunity orf_52 |
| MK016503 | Mycobacterium phage Prithvi | 60311 | 66.771 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Anayavirus | Anayavirus prithvi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| MK016504 | Mycobacterium phage Whouxphf | 59093 | 61.058 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus whouxphf | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_41 |
| MK016662 | Synechococcus phage S-B28 | 45424 | 42.059 | Synechococcus | Group I | Qadamvirus | Qadamvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. KSHK05 | Complete | High-quality | 100.000 | DTR (high-confidence) | Qadamvirus | Qadamvirus SB28 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK016663 | Synechococcus phage S-H68 | 79639 | 40.366 | Synechococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. LTWRED | Low-quality | Genome-fragment | 42.370 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK016664 | Synechococcus phage S-B68 | 163982 | 51.745 | Synechococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK017819 | Clostridium phage CPD4 | 52658 | 34.090 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens ATCC 13124; Clostridium perfringens FORC 25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK017820 | Clostridium phage CPD7 | 18958 | 29.122 | Clostridium | Group I | Susfortunavirus | Susfortunavirus | Unclassified | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens FORC 25 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Susfortunavirus | Susfortunavirus susfortuna | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK024806 | Proteus phage Mydo | 145127 | 44.809 | Proteus | Group I | Mydovirus | Mydovirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | High-quality | High-quality | 98.340 | AAI-based (high-confidence) | Mydovirus | Mydovirus mydo | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |