Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH727547Gordonia phage Foxboro6777365.842GordoniaGroup I FoxborovirusFoxborovirusEmilbogenvirinaeZierdtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae CAG3High-qualityHigh-quality100.000AAI-based (high-confidence) FoxborovirusFoxborovirus foxboroCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH727548Mycobacterium phage Galactic5786161.447MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) CheoctovirusCheoctovirus galacticThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_39;integrase orf_41;cro orf_44;antirepressor orf_45
MH727551Mycobacterium phage Kalah211071360.987MycobacteriumGroup I OmegavirusOmegavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.750AAI-based (high-confidence) OmegavirusOmegavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_73;immunity orf_86;immunity orf_179
MH727552Gordonia phage KidneyBean6780265.824GordoniaGroup I FoxborovirusFoxborovirusEmilbogenvirinaeZierdtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality100.000AAI-based (high-confidence) FoxborovirusFoxborovirus kidneybeanCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH727553Mycobacterium phage LittleLaf6483463.368MycobacteriumGroup I MarvinvirusMarvinvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.940AAI-based (high-confidence) MarvinvirusMarvinvirus marvinCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH727554Mycobacterium phage MuchMore4854564.171MycobacteriumGroup I MicrowolfvirusMicrowolfvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.380AAI-based (high-confidence) MicrowolfvirusMicrowolfvirus wonderCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_32;immunity orf_69
MH727557Mycobacterium phage Paperbeatsrock7564063.020MycobacteriumGroup I KostyavirusKostyavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.330AAI-based (high-confidence) KostyavirusKostyavirus CJW1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_51;immunity orf_54
MH727558Mycobacterium phage Salacia15661064.679MycobacteriumGroup I BixzunavirusBixzunavirusCeeclamvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.170AAI-based (high-confidence) BixzunavirusBixzunavirus quasimodoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH727559Mycobacterium phage Samty7530759.272MycobacteriumGroup I LumosvirusLumosvirusLclasvirinaeVilmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.520AAI-based (high-confidence) LumosvirusLumosvirus lumosCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_36;immunity orf_38
MH727560Corynebacterium phage SamW4460968.134CorynebacteriumGroup I SamwavirusSamwavirusFrobishervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Corynebacterium xerosisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SamwavirusSamwavirus samWCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_26
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