Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH673672Thermus phage phiFa7766459.197ThermusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Thermus thermophilus HB27CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_34
MH673673Thermus phage phiLo17853150.717ThermusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Thermus thermophilus HB8High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
MH673674Thermus phage phiMa5184367.301ThermusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Thermus thermophilus HB8Medium-qualityGenome-fragment64.300AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_16
MH674343Methanobacterium virus Drs33712941.183MethanobacteriumGroup I MetforvirusMetforvirusUnclassifiedAnaerodiviridaeMethanobaviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Methanobacterium formicicum Khl10High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
MH675552Bacteroides phage crAss00110267934.743BacteroidesGroup I KehishuvirusKehishuvirusAsinivirinaeSteigviridaeCrassviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacteroides intestinalis APC919/174High-qualityHigh-quality100.000AAI-based (high-confidence) KehishuvirusKehishuvirus primariusThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MH675927Escherichia phage vB_vPM_PD11415035437.543EscherichiaGroup I JustusliebigvirusJustusliebigvirusStephanstirmvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality99.700AAI-based (high-confidence) JustusliebigvirusJustusliebigvirus PD06Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH684921Sphingomonas phage Scott4307757.430SphingomonasGroup I ScottvirusScottvirusUnclassifiedAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Sphingomonas paucimobilis 121220007-2High-qualityHigh-quality99.510AAI-based (high-confidence) ScottvirusScottvirus scottCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH688040Salmonella phage Mooltan15688244.947SalmonellaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar EnteritidisHigh-qualityHigh-quality99.260AAI-based (high-confidence) KuttervirusKuttervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH688453Klebsiella phage TSK14986150.452KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) WebervirusWebervirus TSK1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH697575Mycobacterium phage Adahisdi5170363.801MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.570AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_68
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