INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH651190 | Streptomyces phage Thestral | 52628 | 67.677 | Streptomyces | Group I | Caelumvirus | Caelumvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces xanthochromogenes NRRL B-5410 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Caelumvirus | Caelumvirus thestral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_28;integrase orf_52 |
| MH669000 | Gordonia phage Ali17 | 58301 | 68.404 | Gordonia | Group I | Leonardvirus | Leonardvirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae CAG3 | High-quality | High-quality | 97.710 | AAI-based (high-confidence) | Leonardvirus | Leonardvirus ali17 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH669001 | Mycobacterium phage EleanorGeorge | 59482 | 61.731 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus eleanorgeorge | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;cro orf_40;antirepressor orf_41 |
| MH669002 | Mycobacterium phage Emmina | 75295 | 62.886 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus porky | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48;immunity orf_51 |
| MH669003 | Mycobacterium phage Girr | 57754 | 61.355 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus girr | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_42;immunity orf_44;antirepressor orf_45 |
| MH669004 | Streptomyces phage Hank144 | 50547 | 66.307 | Streptomyces | Group I | Janusvirus | Janusvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces platensis MJ1A1 | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | Janusvirus | Janusvirus hank144 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_51 |
| MH669005 | Mycobacterium phage JoeyJr | 58962 | 61.445 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus joeyjr | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| MH669007 | Gordonia phage Marietta | 64370 | 66.130 | Gordonia | Group I | Sukkupivirus | Sukkupivirus | Emilbogenvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae CAG3 | High-quality | High-quality | 96.570 | AAI-based (high-confidence) | Sukkupivirus | Sukkupivirus marietta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH669008 | Mycobacterium phage Megamind | 154780 | 64.758 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.020 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus quasimodo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH669009 | Mycobacterium phage Nimbo | 55767 | 61.513 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.770 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus geralt | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |