INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH633487 | Klebsiella phage NJR15 | 49468 | 51.043 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus TAH8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH636380 | Cylindrospermopsis raciborskii virus RM-2018a | 104363 | 39.016 | Cylindrospermopsis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH638294 | Ralstonia phage GP4 | 61129 | 64.014 | Ralstonia | Group I | Gervaisevirus | Gervaisevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gervaisevirus | Gervaisevirus GP4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_39;integrase orf_60 |
| MH638309 | Bacillus phage Hobo | 165213 | 39.605 | Bacillus | Group I | Caeruleovirus | Caeruleovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis kurstaki | Complete | High-quality | 100.000 | DTR (high-confidence) | Caeruleovirus | Caeruleovirus BM15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH638310 | Bacillus phage Kamfam | 161830 | 37.886 | Bacillus | Group I | Bastillevirus | Bastillevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis kurstaki | Complete | High-quality | 100.000 | DTR (high-confidence) | Bastillevirus | Bastillevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH638311 | Bacillus phage OmnioDeoPrimus | 161833 | 38.765 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis DSM 350 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wphvirus | Wphvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH638312 | Bacillus phage Kioshi | 165676 | 39.481 | Bacillus | Group I | Caeruleovirus | Caeruleovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis kurstaki ATCC 33679 | Complete | High-quality | 100.000 | DTR (high-confidence) | Caeruleovirus | Caeruleovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH643777 | Pseudomonas phage YMC12/01/R960 | 37011 | 64.546 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa YMC12/01/R960 | High-quality | High-quality | 96.580 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus R960 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1;integrase orf_5 |
| MH643778 | Pseudomonas phage YMC12/01/R24 | 46148 | 64.839 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa YMC12/01/R24 | High-quality | High-quality | 96.140 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus R24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1;integrase orf_5 |
| MH645904 | Vibrio phage vB_VpS_PG07 | 112106 | 43.650 | Vibrio | Group I | Pogseptimavirus | Pogseptimavirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 99.320 | AAI-based (high-confidence) | Pogseptimavirus | Pogseptimavirus PG07 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |