INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH590603 | Gordonia phage Daredevil | 90490 | 64.843 | Gordonia | Group I | Daredevilvirus | Daredevilvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Daredevilvirus | Daredevilvirus daredevil | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_52 |
| MH590604 | Microbacterium phage ColaCorta | 40494 | 62.031 | Microbacterium | Group I | Elerivirus | Elerivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Elerivirus | Elerivirus eleri | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH590606 | Microbacterium phage Andromedas | 40494 | 62.046 | Microbacterium | Group I | Elerivirus | Elerivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Elerivirus | Elerivirus eleri | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH595538 | Vibrio phage BONAISHI | 288967 | 42.230 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio coralliilyticus LMG20984 (YB1) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH598512 | Bacillus phage Wes44 | 42248 | 42.028 | Bacillus | Group I | Carmenvirus | Carmenvirus | Gutmannvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Carmenvirus | Carmenvirus Wes44 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH598798 | Pelagibacter phage HTVC022P | 42010 | 34.161 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pelagivirus | Pelagivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_9 |
| MH598799 | Pelagibacter phage HTVC025P | 37251 | 32.466 | Pelagibacter | Group I | Thoosavirus | Thoosavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Thoosavirus | Thoosavirus HTVC025P | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_8 |
| MH598800 | Pelagibacter phage HTVC031P | 41046 | 33.406 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter ubique HTCC1062 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH598801 | Pelagibacter phage HTVC200P | 42221 | 33.156 | Pelagibacter | Group I | Votkovvirus | Votkovvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp. FZCC0015 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_9 |
| MH598802 | Pelagibacter phage HTVC201P | 41415 | 33.092 | Pelagibacter | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Pelagibacter sp. FZCC0015 | High-quality | High-quality | 98.810 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_11 |