INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH370377	Salmonella phage S130	110091	39.054	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	97.380	AAI-based (high-confidence)	Tequintavirus	Tequintavirus S131	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH370378	Salmonella phage S131	110091	39.216	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	97.370	AAI-based (high-confidence)	Tequintavirus	Tequintavirus S131	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH370379	Salmonella phage S132	116832	39.944	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus S132	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH370380	Salmonella phage S133	110926	40.061	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	98.050	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus S133	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH370381	Salmonella phage S134	43118	49.652	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S100	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370382	Salmonella phage S135	50591	48.364	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_38;cro orf_61
MH370383	Salmonella phage S137	50593	48.362	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_38;cro orf_60
MH370384	Salmonella phage S138	43119	49.614	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis P132344	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S102	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370385	Salmonella phage S142	43119	49.616	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Enteritidis E2331	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus S102	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH370386	Salmonella phage S147	111447	39.985	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serotype Typhimurium 4/74	High-quality	High-quality	98.520	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus S147	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic