INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH248069	Clostridium phage CPS2	17961	33.300	Clostridium	Group I	Brucesealvirus	Brucesealvirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens ATCC 13124	Complete	High-quality	100.000	ITR (high-confidence)	Brucesealvirus	Brucesealvirus CPS2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH248138	Erwinia phage vB_EamM_Alexandra	266532	50.126	Erwinia	Group I	Alexandravirus	Alexandravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora strain phiEa100 ATCC 29780	High-quality	High-quality	100.000	AAI-based (high-confidence)	Alexandravirus	Alexandravirus alexandra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_322;integrase orf_333
MH248947	Streptomyces phage Yosif	50129	66.117	Streptomyces	Group I	Yosifvirus	Yosifvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces toxytricini NRRL B-5426	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yosifvirus	Yosifvirus yosif	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52
MH252123	Klebsiella phage ZCKP1	150925	39.102	Klebsiella	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP/01	High-quality	High-quality	99.590	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus ZCKP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH252365	Ralstonia phage phiRSP	44526	62.256	Ralstonia	Group I	Coatlandelriovirus	Coatlandelriovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coatlandelriovirus	Coatlandelriovirus RSP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_63
MH268168	Pseudomonas phage PFP1	40914	55.815	Pseudomonas	Group I	Pfluvirus	Pfluvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens	Complete	High-quality	100.000	DTR (high-confidence)	Pfluvirus	Pfluvirus PFP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH271291	Rhodococcus phage Alpacados	46493	58.852	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	98.800	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25
MH271292	Microbacterium phage AnnaSerena	56707	63.809	Microbacterium	Group I	Krampusvirus	Krampusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Krampusvirus	Krampusvirus krampus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH271293	Rhodococcus phage Bradshaw	46606	58.561	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	99.040	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_53
MH271294	Rhodococcus phage Bryce	46347	58.789	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	98.490	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_51