Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH179480Pseudomonas phage 98PfluR60PP7436147.272PseudomonasGroup I LittlefixvirusLittlefixvirusUnclassifiedSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas fluorescensHigh-qualityHigh-quality99.680AAI-based (high-confidence) LittlefixvirusLittlefixvirus 98Pflur60ppCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH181876Salmonella phage vB_SalM-LPSEYT5338746.006SalmonellaGroup I RosemountvirusRosemountvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enteritidisHigh-qualityHigh-quality100.000AAI-based (high-confidence) RosemountvirusRosemountvirus BP63The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MH183162Microbacterium phage Hendrix9775766.075MicrobacteriumGroup I RogerhendrixvirusRogerhendrixvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224 SEAHigh-qualityHigh-quality100.000AAI-based (high-confidence) RogerhendrixvirusRogerhendrixvirus hendrixCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH191395Xanthomonas phage XcP16183052.496XanthomonasGroup I CarpasinavirusCarpasinavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas campestris pv. campestrisHigh-qualityHigh-quality99.920AAI-based (high-confidence) CarpasinavirusCarpasinavirus XcP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH191398Erwinia phage Faunus5406543.649ErwiniaGroup I FaunusvirusFaunusvirusCleopatravirinaeChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovoraHigh-qualityHigh-quality100.000AAI-based (high-confidence) FaunusvirusFaunusvirus faunusCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH193369Enterococcus phage LY03224093434.841EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality100.000AAI-based (high-confidence) EfquatrovirusEfquatrovirus LY0322Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH203051Escherichia phage Gostya910166539.371EscherichiaGroup I TequintavirusTequintavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli C600Medium-qualityGenome-fragment89.970AAI-based (high-confidence) TequintavirusTequintavirus gostya9The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MH203383Enterococcus phage vB_EfaS_AL34078934.838EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality100.000AAI-based (high-confidence) EfquatrovirusEfquatrovirus AL3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH203384Enterococcus phage vB_EfaS_AL24083634.514EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality100.000AAI-based (high-confidence) EfquatrovirusEfquatrovirus AL2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH206183Xanthomonas phage phiXv2656459.552XanthomonasGroup II LophivirusLophivirusUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Xanthomonas campestris pv. vesicatora ATCC35937High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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