INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH153809	Gordonia phage Sitar	59641	67.331	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae NRRL B-16283	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vividuovirus	Vividuovirus sitar	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH153810	Gordonia phage Sour	61670	68.009	Gordonia	Group I	Westmeadvirus	Westmeadvirus	Santaclaravirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae NRRL B-16283	High-quality	High-quality	99.710	AAI-based (high-confidence)	Westmeadvirus	Westmeadvirus sour	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH153811	Microbacterium phage Teagan	41793	63.451	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus teagan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH153812	Rhodococcus phage Grayson	131801	41.246	Rhodococcus	Group I	Weaselvirus	Weaselvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_13
MH153813	Microbacterium phage Squash	62312	66.788	Microbacterium	Group I	Squashvirus	Squashvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	Complete	High-quality	100.000	DTR (high-confidence)	Squashvirus	Squashvirus squash	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH155864	Mycobacterium phage Beauxregard13	50884	63.995	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus JHC117	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_70
MH155865	Mycobacterium phage BobaPhett	59815	61.326	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus bobaphett	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43;immunity orf_47;antirepressor orf_49
MH155866	Mycobacterium phage Byougenkin	54685	61.425	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	94.990	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus byougenkin	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_38;integrase orf_40;immunity orf_42
MH155867	Gordonia phage Easley	46717	66.614	Gordonia	Group I	Beenievirus	Beenievirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae CAG3	High-quality	High-quality	98.490	AAI-based (high-confidence)	Beenievirus	Beenievirus easley	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;immunity orf_39;antirepressor orf_42
MH155868	Streptomyces phage FlowerPower	46133	60.681	Streptomyces	Group I	Flowerpowervirus	Flowerpowervirus	Beephvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces scabiei RL-34	Complete	High-quality	100.000	DTR (high-confidence)	Flowerpowervirus	Flowerpowervirus flowerpower	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic