Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH078572Staphylococcus phage phiSA_BS114297829.799StaphylococcusGroup I BaoshanvirusBaoshanvirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus sp. ATCC 25923High-qualityHigh-quality97.210AAI-based (high-confidence) BaoshanvirusBaoshanvirus BS1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_73
MH102284Salmonella phage vB_SenS_PHB075181843.359SalmonellaGroup I TlsvirusTlsvirusTempevirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.High-qualityHigh-quality100.000AAI-based (high-confidence) TlsvirusTlsvirus PHB07Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH102285Salmonella phage vB_SenS_PHB068440639.187SalmonellaGroup I TequintavirusTequintavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.Medium-qualityGenome-fragment74.680AAI-based (high-confidence) TequintavirusTequintavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MH105080Marinomonas phage YY882857.046MarinomonasUnclassified PolymedevirusPolymedevirusUnclassifiedMestraviridaeVinaviralesBelvinaviricetesProdugelaviricotaAbadenaviraeVaridnaviria Marinomonas sp.Low-qualityGenome-fragment5.560HMM-based (lower-bound) PolymedevirusPolymedevirus YYCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH105773Vibrio phage Rostov 63993450.739VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeCompleteHigh-quality100.000DTR (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH107028Campylobacter phage CP3913071526.044CampylobacterGroup I FletchervirusFletchervirusUnclassifiedConnertonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Campylobacter jejuniHigh-qualityHigh-quality98.550AAI-based (high-confidence) FletchervirusFletchervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH107118Staphylococcus phage CSA131703428.966StaphylococcusGroup I RosenblumvirusRosenblumvirusRakietenvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusCompleteHigh-quality100.000ITR (high-confidence) RosenblumvirusRosenblumvirus CSA13Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH107246Synechococcus phage S-B6415186741.275SynechococcusGroup I ShandvirusShandvirusUnclassifiedKyanoviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Synechococcus sp. WH8102Medium-qualityGenome-fragment87.010AAI-based (high-confidence) ShandvirusShandvirus sb64Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_95
MH107769Staphylococcus phage vB_SauM_0414_10815162730.388StaphylococcusGroup I KayvirusKayvirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus 0414CompleteHigh-quality100.000DTR (high-confidence) KayvirusKayvirus JD7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MH107770Pseudomonas phage vB_PaeP_130_1134420562.357PseudomonasGroup I PhikmvvirusPhikmvvirusKrylovirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa 130CompleteHigh-quality100.000DTR (high-confidence) PhikmvvirusPhikmvvirus pv130113Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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