INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB971354 | Escherichia phage Qbeta | 4217 | 48.138 | Escherichia | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Escherichia coli | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AB981169 | Ralstonia phage RSY1 | 40002 | 64.822 | Ralstonia | Group I | Arsyunavirus | Arsyunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Arsyunavirus | Arsyunavirus RSY1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48 |
| AB981170 | Ralstonia phage RSMSuper | 8956 | 59.669 | Ralstonia | Group II | Habenivirus | Habenivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AB983711 | Ralstonia phage RSJ5 | 43745 | 60.661 | Ralstonia | Group I | Risjevirus | Risjevirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | Risjevirus | Risjevirus RSJ5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ACSJ01000013 | Clostridium phage D-1873 | 10531 | 25.610 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Clostridium botulinum D str. 1873 | Low-quality | Genome-fragment | 5.670 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ACSJ01000015 | Clostridium phage D-1873 | 17272 | 25.272 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Clostridium botulinum D str. 1873 | Low-quality | Genome-fragment | 9.300 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ACSJ01000017 | Clostridium phage D-1873 | 74599 | 25.696 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Clostridium botulinum D str. 1873 | Low-quality | Genome-fragment | 40.180 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_12;antirepressor orf_30;antirepressor orf_35;antirepressor orf_73;antirepressor orf_77 |
| ACSJ01000018 | Clostridium phage D-1873 | 14466 | 25.964 | Clostridium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Clostridium botulinum D str. 1873 | Low-quality | Genome-fragment | 7.790 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AE002163 | Chlamydia phage phiCPAR39 | 4532 | 40.622 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydia pneumoniae AR39 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF009630 | Lactococcus phage bIL170 | 31754 | 34.345 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIL170 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |