INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG763894 | Bacillus phage HonestAbe | 161129 | 38.652 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. kurstaki ATCC 33679 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wphvirus | Wphvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG765274 | Lactobacillus phage Maenad | 78646 | 39.074 | Lactobacillus | Group I | Maenadvirus | Maenadvirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | Maenadvirus | Maenadvirus maenad | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_78;antirepressor orf_111 |
| MG765275 | Lactobacillus phage Bassarid | 37921 | 42.720 | Lactobacillus | Group I | Coetzeevirus | Coetzeevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 98.860 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG765276 | Lactobacillus phage Nyseid | 79221 | 37.067 | Lactobacillus | Group I | Lenusvirus | Lenusvirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | Lenusvirus | Lenusvirus nyseid | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_93 |
| MG765277 | Lactobacillus phage Bacchae | 141124 | 36.346 | Lactobacillus | Group I | Harbinvirus | Harbinvirus | Unclassified | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Harbinvirus | Harbinvirus bacchae | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_149 |
| MG765278 | Lactobacillus phage Silenus | 38716 | 42.484 | Lactobacillus | Group I | Coetzeevirus | Coetzeevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG765279 | Lactobacillus phage Semele | 139450 | 36.331 | Lactobacillus | Group I | Harbinvirus | Harbinvirus | Unclassified | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 98.960 | AAI-based (high-confidence) | Harbinvirus | Harbinvirus semele | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG766218 | Staphylococcus phage vB_SauP_phiAGO1.3 | 17603 | 28.955 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Rosenblumvirus | Rosenblumvirus AGO13 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG766219 | Staphylococcus phage vB_SauP_phiAGO1.9 | 17637 | 28.962 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | ITR (high-confidence) | Rosenblumvirus | Rosenblumvirus AGO13 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG770211 | Gordonia phage Flakey | 76889 | 58.924 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus flakey | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |