INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG593801 | Streptomyces phage Attoomi | 41872 | 69.689 | Streptomyces | Group I | Attoomivirus | Attoomivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces azureus NRRL B-2655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Attoomivirus | Attoomivirus attoomi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_52 |
| MG593802 | Streptomyces phage Omar | 49299 | 67.293 | Streptomyces | Group I | Omarvirus | Omarvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces azureus NRRL B-2655 | High-quality | High-quality | 97.090 | AAI-based (high-confidence) | Omarvirus | Omarvirus omar | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_28;integrase orf_51 |
| MG593803 | Streptomyces phage Rowa | 42890 | 61.203 | Streptomyces | Group I | Rowavirus | Rowavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces azureus NRRL B-2655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rowavirus | Rowavirus rowa | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_24;integrase orf_57 |
| MG596799 | Pseudomonas phage PMBT3 | 87196 | 60.370 | Pseudomonas | Group I | Maxrubnervirus | Maxrubnervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas grimontii MBTL2-21 | High-quality | High-quality | 99.980 | AAI-based (high-confidence) | Maxrubnervirus | Maxrubnervirus PMBT3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG596800 | Pseudomonas phage PMBT14 | 47820 | 54.548 | Pseudomonas | Group I | Knuthellervirus | Knuthellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens ATCC 13525 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Knuthellervirus | Knuthellervirus PMBT14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG599035 | Acinetobacter phage SWH-Ab-3 | 41730 | 39.382 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Friunavirus | Friunavirus Abp1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG602476 | Vibrio phage VVP001 | 76423 | 48.835 | Vibrio | Group I | Mardecavirus | Mardecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio vulnificus | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG602477 | Bacillus phage BCP01 | 157958 | 39.871 | Bacillus | Group I | Caeruleovirus | Caeruleovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | Caeruleovirus | Caeruleovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG603697 | Vibrio phage Vp_R1 | 112127 | 40.324 | Vibrio | Group I | Dalianvirus | Dalianvirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dalianvirus | Dalianvirus R1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG640035 | Vibrio phage Athena1 | 39826 | 42.389 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus V1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |