INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG029515 | Staphylococcus phage phiSa2wa_st80 | 45164 | 33.257 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus strain 15395 genotype ST80-MRSA-IVc | High-quality | High-quality | 97.260 | AAI-based (high-confidence) | Triavirus | Triavirus JS02 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_2;cro orf_8;integrase orf_31 |
| MG029516 | Staphylococcus phage phiSa2wa_st93mssa | 45913 | 33.113 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus W17S genotype ST93-MSSA | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus P240 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_31 |
| MG029517 | Staphylococcus phage phiSa2wa_st93 | 45913 | 33.117 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16790 genotype ST93-MRSA-IVa (2B) | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus P240 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_31 |
| MG029518 | Staphylococcus phage phiSa2wa_st121mssa | 45621 | 33.057 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus K25S genotype ST121-MSSA | High-quality | High-quality | 98.290 | AAI-based (high-confidence) | Triavirus | Triavirus st121mssa | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;integrase orf_29 |
| MG030346 | Proteus phage PM87 | 59128 | 46.729 | Proteus | Group I | Lavrentievavirus | Lavrentievavirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | Complete | High-quality | 100.000 | DTR (high-confidence) | Lavrentievavirus | Lavrentievavirus PM87 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG030347 | Proteus phage PM135 | 104329 | 38.369 | Proteus | Group I | Novosibvirus | Novosibvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Novosibvirus | Novosibvirus PM135 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG049919 | Shigella phage vB_SflS-ISF001 | 50552 | 45.585 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunavirus | Tunavirus ISF001 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG050172 | Escherichia phage DTL | 45814 | 44.251 | Escherichia | Group I | Loudonvirus | Loudonvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Loudonvirus | Loudonvirus DTL | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG099933 | Escherichia phage VB_EcoS-Golestan | 44829 | 50.601 | Escherichia | Group I | Kagunavirus | Kagunavirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 333 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kagunavirus | Kagunavirus golestan | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG099934 | Mycobacterium phage AgentM | 50503 | 60.884 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus jovo | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;immunity orf_61 |