INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF787246	Lactobacillus phage LpeD	145162	34.112	Lactobacillus	Group I	Elpedvirus	Elpedvirus	Unclassified	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus pentosus KLDS1.0413; Lactobacillus plantarum KLDS1.0344	Complete	High-quality	100.000	DTR (high-confidence)	Elpedvirus	Elpedvirus LpeD	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF788075	Pseudomonas phage IME180	49494	44.616	Pseudomonas	Group I	Paundecimvirus	Paundecimvirus	Unclassified	Zobellviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa IME180	High-quality	High-quality	98.650	AAI-based (high-confidence)	Paundecimvirus	Paundecimvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF805716	Pseudomonas phage SL2	279696	36.900	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Phikzvirus	Phikzvirus SL2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF805809	Escherichia phage vB_EcoM_PHB05	147659	37.536	Escherichia	Group I	Justusliebigvirus	Justusliebigvirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	shiga toxin-producing Escherichia coli	High-quality	High-quality	97.690	AAI-based (high-confidence)	Justusliebigvirus	Justusliebigvirus PHB05	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF807953	Escherichia phage Ayreon	44708	50.067	Escherichia	Group I	Dotonborivirus	Dotonborivirus	Wollmanvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K12	High-quality	High-quality	94.900	AAI-based (high-confidence)	Dotonborivirus	Dotonborivirus Ayreon	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;cro orf_33
MF893271	Lysinibacillus phage vB_LspM-01	50753	37.265	Lysinibacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lysinibacillus sphaericus C3-41	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	cro orf_27;antirepressor orf_40;antirepressor orf_107
MF893340	Pseudomonas phage PPSC2	97330	47.510	Pseudomonas	Group I	Shenlongvirus	Shenlongvirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens SA1	Complete	High-quality	100.000	DTR (high-confidence)	Shenlongvirus	Shenlongvirus PPSC2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF893341	Ralstonia phage RPSC1	39628	61.555	Ralstonia	Group I	Stompelvirus	Stompelvirus	Unclassified	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum mc1	Complete	High-quality	100.000	DTR (high-confidence)	Stompelvirus	Stompelvirus RPSC1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF919490	Mycobacterium phage Anselm	53545	63.461	Mycobacterium	Group I	Turbidovirus	Turbidovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Turbidovirus	Turbidovirus anselm	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_35;immunity orf_75
MF919491	Propionibacterium phage Aquarius	30112	54.477	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic