INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF754113	Vibrio phage vB_VpaS_KF3	75955	49.029	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	99.180	AAI-based (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF754114	Vibrio phage vB_VpaS_KF4	75501	49.050	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	98.590	AAI-based (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF754115	Vibrio phage vB_VpaS_KF5	76402	48.831	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	99.710	AAI-based (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF754116	Vibrio phage vB_VpaS_KF6	75904	48.904	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	99.070	AAI-based (high-confidence)	Mardecavirus	Mardecavirus SSP002	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF765814	Bacillus phage Taffo16	164241	37.786	Bacillus	Group I	Bequatrovirus	Bequatrovirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki ATCC 33679	Complete	High-quality	100.000	DTR (high-confidence)	Bequatrovirus	Bequatrovirus riley	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF766044	Streptomyces phage Amethyst	49372	67.224	Streptomyces	Group I	Omarvirus	Omarvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	97.250	AAI-based (high-confidence)	Omarvirus	Omarvirus amethyst	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_28;integrase orf_50
MF766045	Streptomyces phage Daudau	50602	67.120	Streptomyces	Group I	Caelumvirus	Caelumvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	99.490	AAI-based (high-confidence)	Caelumvirus	Caelumvirus daudau	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_29;integrase orf_50
MF766046	Streptomyces phage Diane	50483	66.694	Streptomyces	Group I	Omarvirus	Omarvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes B-5410	High-quality	High-quality	99.500	AAI-based (high-confidence)	Omarvirus	Omarvirus diane	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_28;integrase orf_48
MF766047	Streptomyces phage SqueakyClean	50837	67.020	Streptomyces	Group I	Janusvirus	Janusvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	100.000	AAI-based (high-confidence)	Janusvirus	Janusvirus janus	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_29;integrase orf_50
MF766048	Streptomyces phage Tefunt	50574	66.839	Streptomyces	Group I	Omarvirus	Omarvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	99.620	AAI-based (high-confidence)	Omarvirus	Omarvirus tefunt	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_29;integrase orf_53