INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF621978	Caulobacter phage Lullwater	44638	54.653	Caulobacter	Group I	Lullwatervirus	Lullwatervirus	Unclassified	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter vibrioides	Complete	High-quality	100.000	DTR (high-confidence)	Lullwatervirus	Lullwatervirus lullwater	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF623055	Pseudomonas phage BrSP1	66189	55.680	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus BrSP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF629150	Salinibacter phage SRUTV-1	50672	59.445	Salinibacter	Group I	Kairosalinivirus	Kairosalinivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	94.160	AAI-based (high-confidence)	Kairosalinivirus	Kairosalinivirus SRUTV1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF630921	Escherichia phage IMM-002	40060	53.190	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	enterotoxigenic Escherichia coli 278485-2	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus IMM002	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF630922	Escherichia phage IMM-001	32486	44.318	Escherichia	Group I	Braunvirinae	Unclassified	Braunvirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	enterotoxigenic Escherichia coli 2255272	Medium-quality	Genome-fragment	66.750	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MF663761	Klebsiella phage vB_KpnM_KpV79	47760	48.955	Klebsiella	Group I	Sircambvirus	Sircambvirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	98.350	AAI-based (high-confidence)	Sircambvirus	Sircambvirus KpV79	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF663786	Bordetella phage vB_BbrM_PHB04	94005	65.464	Bordetella	Group I	Phabquatrovirus	Phabquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bordetella bronchiseptica 4715	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phabquatrovirus	Phabquatrovirus PHB04	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_111
MF668266	Arthrobacter phage Adat	45428	45.749	Arthrobacter	Group I	Jasminevirus	Jasminevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	Complete	High-quality	100.000	DTR (high-confidence)	Jasminevirus	Jasminevirus adat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF668267	Mycobacterium phage Apocalypse	59947	66.370	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.950	AAI-based (high-confidence)	Anayavirus	Anayavirus apocalypse	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42;immunity orf_44
MF668268	Mycobacterium phage Aroostook	41903	66.630	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.390	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33