INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF541408	Streptomyces phage Jash	50066	65.923	Streptomyces	Group I	Likavirus	Likavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus ATCC 10137	High-quality	High-quality	98.760	AAI-based (high-confidence)	Likavirus	Likavirus izzy	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_28;integrase orf_46
MF541409	Streptomyces phage Oliynyk	49976	65.938	Streptomyces	Group I	Likavirus	Likavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	98.580	AAI-based (high-confidence)	Likavirus	Likavirus izzy	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_28;integrase orf_46
MF541410	Streptomyces phage Ozzie	49961	66.216	Streptomyces	Group I	Likavirus	Likavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces xanthochromogenes NRRL B-5410	High-quality	High-quality	98.620	AAI-based (high-confidence)	Likavirus	Likavirus caliburn	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_28;integrase orf_45
MF547662	Clostridioides phage LIBA6276	134243	26.141	Clostridioides	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridioides difficile	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_18;integrase orf_56;integrase orf_137
MF547663	Clostridioides phage LIBA2945	132508	26.272	Clostridioides	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridioides difficile	High-quality	High-quality	99.390	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_18;integrase orf_55;integrase orf_136;integrase orf_137
MF564201	Escherichia phage vB_EcoS-95	50910	44.830	Escherichia	Group I	Warwickvirus	Warwickvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Warwickvirus	Warwickvirus wv95	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF574151	Vibrio phage JSF25	38593	42.728	Vibrio	Group I	Chatterjeevirus	Chatterjeevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio sp.	Complete	High-quality	100.000	DTR (high-confidence)	Chatterjeevirus	Chatterjeevirus ICP3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF580410	Staphylococcus phage phiSa2wa_st1	45585	33.281	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus strain 15798 genotype ST1-MRSA-IVa	High-quality	High-quality	98.140	AAI-based (high-confidence)	Triavirus	Triavirus st1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_29
MF580759	Streptococcus phage 7A5	35936	38.304	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	96.890	AAI-based (high-confidence)	Moineauvirus	Moineauvirus mv7A5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_22;antirepressor orf_26
MF580760	Streptococcus phage 7T	35141	38.727	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	95.210	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27