INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF185731	Arthrobacter phage Molivia	58247	53.462	Arthrobacter	Group I	Amigovirus	Amigovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	Complete	High-quality	100.000	DTR (high-confidence)	Amigovirus	Amigovirus molivia	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF185732	Mycobacterium phage Stagni	50856	64.032	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus microwolf	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_70
MF185733	Mycobacterium phage StepMih	50841	64.013	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus microwolf	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_69
MF186604	Methanosarcina spherical virus	10567	38.478	Methanosarcina	Group I	Tectiviridae	Unclassified	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Methanosarcina sp.	Low-quality	Genome-fragment	25.140	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	lytic
MF188997	Salmonella phage vB_SalP_PM43	40574	47.461	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serovar Typhimurium MTCC 98	High-quality	High-quality	98.860	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus ST64T	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_3;integrase orf_19;antirepressor orf_27
MF189170	Arthrobacter phage Arcadia	58059	45.152	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.690	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus arcadia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189171	Arthrobacter phage Correa	57401	45.233	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	98.590	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus correa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189172	Arthrobacter phage Elsa	58059	45.152	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.690	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus arcadia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189173	Arthrobacter phage Heisenberger	58208	45.126	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.920	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus heisenberger	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189174	Arthrobacter phage Nason	58059	45.149	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.690	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus arcadia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic