INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF156580 | Bacillus phage RadRaab | 23946 | 30.623 | Bacillus | Group I | Claudivirus | Claudivirus | Northropvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis Kurstaki | High-quality | High-quality | 91.350 | AAI-based (high-confidence) | Claudivirus | Claudivirus stitch | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF158036 | Salmonella phage St161 | 29178 | 50.494 | Salmonella | Group I | Guernseyvirinae | Unclassified | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica sv. typhimurium | Medium-quality | Genome-fragment | 68.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MF158037 | Salmonella phage St162 | 42701 | 51.217 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica sv. typhimurium | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus St162 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF158038 | Shigella phage Sf11 SMD-2017 | 46454 | 45.985 | Shigella | Group I | Cedarrivervirus | Cedarrivervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | Complete | High-quality | 100.000 | DTR (high-confidence) | Cedarrivervirus | Cedarrivervirus Sf11 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF158039 | Shigella phage Sf12 | 47647 | 44.328 | Shigella | Group I | Eastlansingvirus | Eastlansingvirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri; Escherichia coli B | Complete | High-quality | 100.000 | DTR (high-confidence) | Eastlansingvirus | Eastlansingvirus Sf12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF158040 | Shigella phage Sf13 | 87570 | 38.911 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | Complete | High-quality | 100.000 | DTR (high-confidence) | Mooglevirus | Mooglevirus Sf13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF158041 | Shigella phage Sf15 | 88474 | 38.998 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | Complete | High-quality | 100.000 | DTR (high-confidence) | Mooglevirus | Mooglevirus Sf17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF158042 | Shigella phage Sd1 | 48262 | 44.499 | Shigella | Group I | Wilsonroadvirus | Wilsonroadvirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella dysenteriae, Escherichia coli B | Complete | High-quality | 100.000 | DTR (high-confidence) | Wilsonroadvirus | Wilsonroadvirus Sd1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF158043 | Shigella phage Sf16 | 88580 | 39.017 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus Sf14 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF158044 | Shigella phage Sf18 | 90270 | 39.003 | Shigella | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus Sf17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |