Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
LC768497Klebsiella phage phiKp_2711022345.500KlebsiellaGroup I SugarlandvirusSugarlandvirusUnclassifiedDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) SugarlandvirusSugarlandvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC768498Klebsiella phage phiKp_303374048.832KlebsiellaGroup I LederbergvirusLederbergvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) TeetrevirusTeetrevirus Kp31Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC768499Klebsiella phage phiKp_313950650.570KlebsiellaGroup I TeetrevirusTeetrevirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) TeetrevirusTeetrevirus Kp31Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC768500Klebsiella phage phiKp_3225146043.813KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality99.240AAI-based (high-confidence) MiamivirusMiamivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC776701Pseudomonas phage Ep44461456.025PseudomonasGroup I ActinidiaevirusActinidiaevirusCorkvirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas syringae pv. actinidiaeCompleteHigh-quality100.000DTR (high-confidence) ActinidiaevirusActinidiaevirus Ep4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC778249Aeromonas phage phiWae1422584042.939AeromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified UnspecifiedCompleteHigh-quality100.000DTR (high-confidence) ChrysonvirusChrysonvirus as5The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
LC778250Aeromonas phage phiWae155739758.451AeromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified UnspecifiedHigh-qualityHigh-quality93.330AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
LC778449Cronobacter phage RZ44244255.490CronobacterGroup I BonnellvirusBonnellvirusStentvirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Cronobacter sakazakiiCompleteHigh-quality100.000DTR (high-confidence) BonnellvirusBonnellvirus RZ4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC779065Yersinia phage vB_Yru_GN114509332.148YersiniaGroup I SepahanvirusSepahanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia ruckeriHigh-qualityHigh-quality95.500AAI-based (medium-confidence) SepahanvirusSepahanvirus GN1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC779549Cronobacter phage GY34162555.705CronobacterGroup I CronosvirusCronosvirusMelnykvirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Cronobacter sakazakiiCompleteHigh-quality100.000DTR (high-confidence) CronosvirusCronosvirus GY3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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