INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC645439 | Stx2a-converting phage Stx2_16002 | 60591 | 48.865 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.150 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_21;cro orf_22;antirepressor orf_36;antirepressor orf_49 |
| LC645440 | Stx2a-converting phage Stx2_EH2086 | 64232 | 49.187 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.960 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2;cro orf_21;cro orf_22;antirepressor orf_36;antirepressor orf_49;antirepressor orf_52;antirepressor orf_85 |
| LC645441 | Stx2a-converting phage Stx2_EH2085 | 65600 | 49.227 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.030 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2;cro orf_21;cro orf_22;antirepressor orf_36;antirepressor orf_49;antirepressor orf_88 |
| LC645442 | Stx2a-converting phage Stx2_112991 | 62305 | 49.996 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.410 | AAI-based (high-confidence) | Oslovirus | Oslovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;antirepressor orf_29;cro orf_32;cro orf_33;antirepressor orf_49;antirepressor orf_52 |
| LC645443 | Stx2a-converting phage Stx2_EH2011 | 63180 | 50.003 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.850 | AAI-based (high-confidence) | Oslovirus | Oslovirus ArgO145 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_30;cro orf_33;cro orf_34;antirepressor orf_50 |
| LC645444 | Stx2a-converting phage Stx2_Ech14022 | 62996 | 50.179 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.480 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645445 | Stx2a-converting phage Stx2_H27V05_argW | 64958 | 50.105 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.420 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645446 | Stx2a-converting phage Stx2_H27V05_wrbA | 66479 | 50.037 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.710 | AAI-based (high-confidence) | Oslovirus | Oslovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_4;antirepressor orf_12;cro orf_37;cro orf_38;antirepressor orf_54;antirepressor orf_57 |
| LC645447 | Stx2a-converting phage Stx2_KIH15-140 | 62282 | 50.294 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.390 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;cro orf_29;cro orf_30;antirepressor orf_45;antirepressor orf_48 |
| LC645448 | Stx2a-converting phage Stx2_140166 | 62048 | 50.335 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.030 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;cro orf_29;cro orf_30;antirepressor orf_45;antirepressor orf_48 |