INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC625742 | Bacteriophage sp. | 37025 | 38.612 | Unspecified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterococcus gallinarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_41 |
| LC628082 | Streptococcus phage SG005 | 16127 | 34.520 | Streptococcus | Group I | Rountreeviridae | Unclassified | Unclassified | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus gordonii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LC644557 | Tetragenococcus phage phiWJ7 | 17405 | 32.916 | Tetragenococcus | Group I | Rountreeviridae | Unclassified | Unclassified | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tetragenococcus halophilus WJ7 | High-quality | High-quality | 96.660 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LC644971 | Acetobacter phage phiAO1 | 34100 | 61.364 | Acetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acetobacter orleanensis NBRC 3170 | Medium-quality | Genome-fragment | 82.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LC644972 | Acetobacter phage phiAP1 | 42805 | 52.391 | Acetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acetobacter pasteurianus NBRC 109446 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| LC644973 | Acetobacter phage phiAX1 | 50652 | 56.047 | Acetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acetobacter sp. ATCC 21760 | Medium-quality | Genome-fragment | 78.210 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6 |
| LC644974 | Komagataeibacter phage phiKM1 | 51977 | 62.185 | Komagataeibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Komagataeibacter maltaceti NBRC 14815 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_76 |
| LC644975 | Komagataeibacter phage phiKX1 | 53192 | 60.161 | Komagataeibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Komagataeibacter xylinus NBRC 13772 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_21 |
| LC644976 | Komagataeibacter phage phiKX2 | 53798 | 60.004 | Komagataeibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Komagataeibacter xylinus NBRC 13773 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_2 |
| LC645408 | Stx2c-converting phage Stx2_EH1904 | 64967 | 51.374 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_6;cro orf_27;antirepressor orf_28;antirepressor orf_39;antirepressor orf_78 |