INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC616032 | Stx2a-converting phage Stx2_EH1965 | 65382 | 49.483 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_31;cro orf_32;antirepressor orf_45;antirepressor orf_57;antirepressor orf_62 |
| LC616033 | Stx2a-converting phage Stx2_EH0787 | 66751 | 49.676 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_34;cro orf_35;antirepressor orf_48;antirepressor orf_63;antirepressor orf_66 |
| LC616034 | Stx2a-converting phage Stx2_EH0337 | 66701 | 49.578 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_32;cro orf_33;antirepressor orf_46;antirepressor orf_61;antirepressor orf_64 |
| LC616035 | Stx2a-converting phage Stx2_13E027 | 67740 | 49.511 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_31;cro orf_32;antirepressor orf_45;antirepressor orf_65;antirepressor orf_68 |
| LC616036 | Stx2a-converting phage Stx2_PV06-102 | 66659 | 49.474 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_36;cro orf_37;antirepressor orf_50;antirepressor orf_63;antirepressor orf_66 |
| LC616037 | Stx2a-converting phage Stx2_4151 | 65395 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616038 | Stx2a-converting phage Stx2_707 | 67931 | 49.462 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_63;antirepressor orf_66 |
| LC616039 | Stx2a-converting phage Stx2_131033 | 66711 | 49.559 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_35;cro orf_36;antirepressor orf_49;antirepressor orf_62;antirepressor orf_65 |
| LC616040 | Stx2a-converting phage Stx2_3993 | 66707 | 49.577 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616041 | Stx2a-converting phage Stx2_PV12-16 | 65391 | 49.481 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_31;cro orf_32;antirepressor orf_48;antirepressor orf_61;antirepressor orf_64 |