INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY982929 | Cronobacter phage CSP1 | 60222 | 44.700 | Cronobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC 29544 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Seuratvirus | Seuratvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY984068 | Erwinia phage vB_EamM_Y3 | 261365 | 47.178 | Erwinia | Group I | Sasquatchvirus | Sasquatchvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora 1/79 | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | Sasquatchvirus | Sasquatchvirus Y3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_31;integrase orf_318 |
| KY985004 | Escherichia phage vB_EcoS_SH2 | 49088 | 45.475 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli MC1061 | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | Tunavirus | Tunavirus SH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_59 |
| KY992519 | Flavobacterium phage V175 | 49016 | 29.743 | Flavobacterium | Group I | Ficleduovirus | Ficleduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ficleduovirus | Ficleduovirus FCV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY992520 | Flavobacterium phage V181 | 49014 | 29.728 | Flavobacterium | Group I | Ficleduovirus | Ficleduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ficleduovirus | Ficleduovirus FCV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY994101 | Pseudomonas phage vB_PaeM_G1 | 87646 | 54.682 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa DLG | Complete | High-quality | 100.000 | DTR (high-confidence) | Nankokuvirus | Nankokuvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY996523 | Clostridium phage CPS1 | 19089 | 28.257 | Clostridium | Group I | Gregsiragusavirus | Gregsiragusavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | Gregsiragusavirus | Gregsiragusavirus CPS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| L06183 | Leuconostoc phage L5 | 2435 | 33.265 | Leuconostoc | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc oenos | |||||||||
| L13696 | Plasmavirus L2 | 11965 | 31.960 | Unspecified | Unclassified | Plasmavirus | Plasmavirus | Unclassified | Plasmaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycoplasma sp. | |||||||||
| L33769 | Lactococcus phage bIL67 | 22195 | 35.990 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus |