INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KY296500	Xenohaliotis phage pCXc-HC2016	35736	38.866	Xenohaliotis	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Xenohaliotis californiensis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
KY296501	Xenohaliotis phage pCXc-HR2015	35728	38.866	Xenohaliotis	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Xenohaliotis californiensis	High-quality	High-quality	99.980	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_22
KY303907	Enterococcus phage EF-P29	58984	39.768	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis GF29	High-quality	High-quality	100.000	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY316062	Ralstonia phage RS-PII-1	42042	63.177	Ralstonia	Group I	Sukuvirus	Sukuvirus	Unclassified	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum TB15-15	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sukuvirus	Sukuvirus RSPII1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
KY318515	Yersinia phage fHe-Yen3-01	42771	47.672	Yersinia	Group I	Pokrovskaiavirus	Pokrovskaiavirus	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia enterocolitica serotype O:3 strain 6471/76	Complete	High-quality	100.000	DTR (high-confidence)	Pokrovskaiavirus	Pokrovskaiavirus fHeYen301	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY319168	Mycobacterium phage CrystalP	76483	62.981	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kostyavirus	Kostyavirus toto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_50;immunity orf_53
KY348865	Mycobacterium phage Bubbles123	57647	61.375	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus bubbles123	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_39;immunity orf_41;antirepressor orf_43
KY349816	Streptococcus phage Str01	37030	37.934	Streptococcus	Group I	Stonewallvirus	Stonewallvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus pyogenes	High-quality	High-quality	96.920	AAI-based (high-confidence)	Stonewallvirus	Stonewallvirus A25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_25;antirepressor orf_31
KY363359	Streptococcus phage Str03	32296	40.253	Streptococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus pyogenes	High-quality	High-quality	96.570	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_24;cro orf_27;cro orf_46;integrase orf_48
KY363465	Providencia phage vB_PreS_PR1	118537	39.518	Providencia	Group I	Priunavirus	Priunavirus	Unclassified	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Providencia sp.	Complete	High-quality	100.000	DTR (high-confidence)	Priunavirus	Priunavirus PR1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic