Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY271396Klebsiella phage 2 LV-20174440053.725KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae H151440672High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_66
KY271397Klebsiella phage 3LV20173510054.430KlebsiellaGroup I ReginaelenavirusReginaelenavirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KH43High-qualityHigh-quality100.000AAI-based (high-confidence) ReginaelenavirusReginaelenavirus rv3LV2017Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;integrase orf_14
KY271398Klebsiella phage 4LV20173354050.403KlebsiellaGroup I ElveevirusElveevirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KL49High-qualityHigh-quality95.320AAI-based (high-confidence) ElveevirusElveevirus 4LV2017The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1
KY271399Klebsiella phage 5 LV-20174701452.884KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KH43High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_1
KY271400Klebsiella phage 6 LV-20171926053.172KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KH43Low-qualityGenome-fragment41.840AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_36
KY271401Klebsiella phage 1 LV-20172988050.422KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae KH43Medium-qualityGenome-fragment81.690AAI-based (high-confidence) SamsivirusSamsivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
KY271402Klebsiella phage 48ST3075233852.375KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae Kp-48High-qualityHigh-quality97.930AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateparA orf_56
KY290756Vibrio phage Vp6704312143.401VibrioGroup I KaohsiungvirusKaohsiungvirusColwellvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio alginolyticus E06333CompleteHigh-quality100.000DTR (high-confidence) KaohsiungvirusKaohsiungvirus Vp670Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY290947Aeromonas phage 34634957.020AeromonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas salmonicida HER1084High-qualityHigh-quality97.770AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_79
KY290948Aeromonas phage 44RR2.8t.217359043.880AeromonasGroup I BiquartavirusBiquartavirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas salmonicida HER1098High-qualityHigh-quality100.000AAI-based (high-confidence) BiquartavirusBiquartavirus 44RR2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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