INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY084243 | Pectobacterium phage PP74 | 39790 | 48.635 | Pectobacterium | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium wasabiae PB20 | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus PP74 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY087898 | Pectobacterium phage PP101 | 53333 | 44.944 | Pectobacterium | Group I | Suwonvirus | Suwonvirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium carotovorum subsp. carotovorum PB29 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Suwonvirus | Suwonvirus PP101 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY087992 | Mycobacterium phage Mitti | 57895 | 67.977 | Mycobacterium | Group I | Fionnbharthvirus | Fionnbharthvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fionnbharthvirus | Fionnbharthvirus fionnbharth | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44;immunity orf_46;cro orf_47 |
| KY087993 | Mycobacterium phage Hammy | 61812 | 67.230 | Mycobacterium | Group I | Amginevirus | Amginevirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Amginevirus | Amginevirus darthP | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_42;cro orf_43 |
| KY092479 | Streptomyces phage Ididsumtinwong | 37817 | 72.367 | Streptomyces | Group I | Austintatiousvirus | Austintatiousvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Austintatiousvirus | Austintatiousvirus ididsumtinwong | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;cro orf_32 |
| KY092480 | Streptomyces phage Picard | 39522 | 72.605 | Streptomyces | Group I | Picardvirus | Picardvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Picardvirus | Picardvirus picard | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_31;cro orf_32 |
| KY092481 | Streptomyces phage PapayaSalad | 38411 | 72.635 | Streptomyces | Group I | Austintatiousvirus | Austintatiousvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Austintatiousvirus | Austintatiousvirus papayasalad | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;cro orf_31;integrase orf_47 |
| KY092482 | Streptomyces phage Mojorita | 38496 | 72.537 | Streptomyces | Group I | Picardvirus | Picardvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 98.700 | AAI-based (high-confidence) | Picardvirus | Picardvirus picard | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_31;cro orf_32 |
| KY092483 | Streptomyces phage Bioscum | 37830 | 72.342 | Streptomyces | Group I | Austintatiousvirus | Austintatiousvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Austintatiousvirus | Austintatiousvirus ididsumtinwong | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;cro orf_32 |
| KY092484 | Streptomyces phage Raleigh | 40785 | 71.801 | Streptomyces | Group I | Raleighvirus | Raleighvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Raleighvirus | Raleighvirus raleigh | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;cro orf_31 |