Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX879601Liberibacter phage SGCA5-13602242.144LiberibacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Liberibacter asiaticus str. SGCA5High-qualityHigh-quality92.370AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_30
KX879602Liberibacter phage HHCA1-23898939.314LiberibacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Liberibacter asiaticus str. HHCAHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_31
KX879627Campylobacter phage vB_CjeM_Los113407326.196CampylobacterGroup I FletchervirusFletchervirusUnclassifiedConnertonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Campylobacter jejuniHigh-qualityHigh-quality100.000AAI-based (high-confidence) FletchervirusFletchervirus Los1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX879641Streptococcus phage CHPC5773512936.827StreptococcusGroup I PiorkowskivirusPiorkowskivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus thermophilusHigh-qualityHigh-quality100.000AAI-based (high-confidence) PiorkowskivirusPiorkowskivirus CHPC577Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX879642Streptococcus phage CHPC9263007737.025StreptococcusGroup I PiorkowskivirusPiorkowskivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus thermophilusHigh-qualityHigh-quality93.020AAI-based (high-confidence) PiorkowskivirusPiorkowskivirus CHPC926The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateantirepressor orf_26;cro orf_27
KX879643Streptococcus phage CHPC11513350738.473StreptococcusGroup I VansinderenvirusVansinderenvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus thermophilusHigh-qualityHigh-quality90.660AAI-based (high-confidence) VansinderenvirusVansinderenvirus CHPC1232Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_27
KX879752Halomonas phage QHHSV-13727066.802HalomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Halomonas ventosaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperatecro orf_6;integrase orf_22
KX889068Vibrio phage vB_VspP_pVa57814543.158VibrioGroup I GalateavirusGalateavirusPontosvirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio splendidusHigh-qualityHigh-quality100.000AAI-based (high-confidence) GalateavirusGalateavirus PVA5Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX897981Mycobacterium phage StarStuff5278563.503MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_31;immunity orf_70
KX898399Pseudomonas phage JG0125835958.442PseudomonasGroup I NipunavirusNipunavirusQueuovirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) NipunavirusNipunavirus NP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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