INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX817175 | Mycobacterium phage Albee | 51372 | 63.906 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus peaches | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_64 |
| KX822733 | Pseudoalteromonas phage PH357 | 136203 | 34.576 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. BH357 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KX826077 | Salmonella phage UPF_BP2 | 54894 | 46.009 | Salmonella | Group I | Rosemountvirus | Rosemountvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Bredney | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rosemountvirus | Rosemountvirus UPFBP2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KX827368 | Staphylococcus phage SpT5 | 39804 | 35.798 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius strain E045 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Coventryvirus | Coventryvirus SN8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_11;cro orf_17;cro orf_18;cro orf_19;antirepressor orf_24 |
| KX827369 | Staphylococcus phage SpT152 | 41087 | 35.537 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius strain E139 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coventryvirus | Coventryvirus SpT152 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_7;antirepressor orf_12 |
| KX827370 | Staphylococcus phage SpT252 | 40093 | 35.695 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius strain E045 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coventryvirus | Coventryvirus WIS42 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_11;cro orf_17;cro orf_18;cro orf_19;antirepressor orf_24 |
| KX827371 | Staphylococcus phage SpT99F3 | 40751 | 35.587 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius strain ED99 | High-quality | High-quality | 99.140 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;antirepressor orf_8 |
| KX828710 | Shigella phage SH6 | 50552 | 45.828 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunavirus | Tunavirus SH6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX828711 | Shigella phage SH7 | 164870 | 35.446 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sp. | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus sh7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX831080 | Mycobacterium phage Lukilu | 157034 | 64.656 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.420 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus lukilu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_40 |