INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BK000583 | Salmonella phage P22 | 41724 | 47.090 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus P22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_65 |
| BK010646 | Bacteroides phage p00 | 42831 | 53.043 | Bacteroides | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacteroides dorei CL02T12C06 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013337 | Natrinema versiforme icosahedral virus 1 | 18925 | 63.530 | Natrinema | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Natrinema versiforme strain BOL5-4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013338 | Haloterrigena jeotgali icosahedral virus 1 | 17189 | 63.989 | Haloterrigena | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloterrigena jeotgali strain A29 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013345 | Aquificae Conch Spring virus | 37258 | 35.515 | Unspecified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aquificae | High-quality | High-quality | 94.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013346 | Aquificae Joseph's Coat Spring virus | 39372 | 33.968 | Unspecified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aquificae | High-quality | High-quality | 99.940 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013347 | Thermocrinis Great Boiling Spring virus | 41208 | 36.918 | Thermocrinis | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Thermocrinis | Low-quality | Genome-fragment | 35.990 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK059157 | Altiarchaeum virus | 12584 | 31.921 | Altiarchaeum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| BK059162 | Altiarchaeum virus | 22586 | 35.633 | Altiarchaeum | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Low-quality | Genome-fragment | 26.030 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK059895 | Cyanophage Cy-LDV1 | 47138 | 67.288 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cylindrospermopsis raciborskii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |