INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX557282 | Gordonia phage Nyceirae | 41857 | 67.513 | Gordonia | Group I | Nyceiraevirus | Nyceiraevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Nyceiraevirus | Nyceiraevirus nyceirae | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33;immunity orf_34 |
| KX557283 | Gordonia phage Remus | 52738 | 61.967 | Gordonia | Group I | Soupsvirus | Soupsvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Soupsvirus | Soupsvirus strosahl | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_76 |
| KX557284 | Gordonia phage Strosahl | 52738 | 61.963 | Gordonia | Group I | Soupsvirus | Soupsvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Soupsvirus | Soupsvirus strosahl | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_76 |
| KX557285 | Gordonia phage Terapin | 66611 | 59.552 | Gordonia | Group I | Terapinvirus | Terapinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.660 | AAI-based (high-confidence) | Terapinvirus | Terapinvirus terapin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX557286 | Gordonia phage Twister6 | 57804 | 67.722 | Gordonia | Group I | Wizardvirus | Wizardvirus | Frickvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 97.410 | AAI-based (high-confidence) | Wizardvirus | Wizardvirus twister6 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_23;integrase orf_46;integrase orf_49 |
| KX557287 | Gordonia phage Zirinka | 52077 | 66.667 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.000 | AAI-based (high-confidence) | Nymphadoravirus | Nymphadoravirus zirinka | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_41;antirepressor orf_45 |
| KX557288 | Rhodococcus phage ChewyVIII | 69165 | 61.804 | Rhodococcus | Group I | Chewyvirus | Chewyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chewyvirus | Chewyvirus chewyVIII | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX574454 | Mycobacterium phage PacerPaul | 52732 | 63.576 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_71 |
| KX574455 | Mycobacterium phage Pomar16 | 52833 | 63.428 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;immunity orf_70 |
| KX576638 | Mycobacterium phage Gruunaga | 52195 | 61.383 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.230 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus gladiator | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_33;immunity orf_69 |