Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX557282Gordonia phage Nyceirae4185767.513GordoniaGroup I NyceiraevirusNyceiraevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.490AAI-based (high-confidence) NyceiraevirusNyceiraevirus nyceiraeCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_33;immunity orf_34
KX557283Gordonia phage Remus5273861.967GordoniaGroup I SoupsvirusSoupsvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.650AAI-based (high-confidence) SoupsvirusSoupsvirus strosahlCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateimmunity orf_76
KX557284Gordonia phage Strosahl5273861.963GordoniaGroup I SoupsvirusSoupsvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.650AAI-based (high-confidence) SoupsvirusSoupsvirus strosahlCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateimmunity orf_76
KX557285Gordonia phage Terapin6661159.552GordoniaGroup I TerapinvirusTerapinvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.660AAI-based (high-confidence) TerapinvirusTerapinvirus terapinCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX557286Gordonia phage Twister65780467.722GordoniaGroup I WizardvirusWizardvirusFrickvirinaeStackebrandtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality97.410AAI-based (high-confidence) WizardvirusWizardvirus twister6The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_23;integrase orf_46;integrase orf_49
KX557287Gordonia phage Zirinka5207766.667GordoniaGroup I NymphadoravirusNymphadoravirusNymbaxtervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.000AAI-based (high-confidence) NymphadoravirusNymphadoravirus zirinkaThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_41;antirepressor orf_45
KX557288Rhodococcus phage ChewyVIII6916561.804RhodococcusGroup I ChewyvirusChewyvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus erythropolis RIA 643High-qualityHigh-quality100.000AAI-based (high-confidence) ChewyvirusChewyvirus chewyVIIICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX574454Mycobacterium phage PacerPaul5273263.576MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_71
KX574455Mycobacterium phage Pomar165283363.428MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_31;immunity orf_70
KX576638Mycobacterium phage Gruunaga5219561.383MycobacteriumGroup I GladiatorvirusGladiatorvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.230AAI-based (high-confidence) GladiatorvirusGladiatorvirus gladiatorCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateparA orf_33;immunity orf_69
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